GEMINI
The GEMINI package allows users to analyze combinatorial CRISPR screens, as described in Zamanighomi et al.
GEMINI package on Github: github.com/sellerslab/gemini
GEMINI package on Bioconductor: bioconductor.org/packages/devel/bioc/html/gemini.html
CCLE
Drug sensitivity, shRNA knockdown, CRISPR-Cas9 knockout, splicing, DNA methylation, histone H3 modification, microRNA expression and reverse-phase protein array data for 1,072 cancer cell lines.
Broad Institute CCLE portal: portals.broadinstitute.org/ccle
Raw data: www.ncbi.nlm.nih.gov/sra?term=PRJNA523380
Gene expression data
from Sing et al., Cancer Cell (2002)
GEO link: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE68907